Supervision of Master Theses and Others

 

Master Students
 

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• Lucas Vincent (2021) Interactive simulation of a digital patient in the operating room. Exploitation of past observed surgeries to guide the scenario run by a learner. Master of Bioinformatics (M2), University of Rennes 1, march-september.
                   

• Julien Paris (2021) Contribution to the development of tools dedicated to pattern discovery and pattern recognition in anaesthetic profiles. Master of Bioinformatics (M1), University of Nantes, march-july.
   

• Fatima Cheerak (2019) Metaheuristics for the synthetic representation of event traces. Master of Computer Science / M2 ORO (Operation Research and Optimization), University of Nantes, february-july.
   

• Emile Benoit (2018) Representative decision for the preferences of a group. Experimental analysis of the limitations of a resolution method based on integer linear programming. Master of Computer Science / M1 ORO (Operation Research and Optimization), University of Nantes, january-june.
   

• Rémi Pelloquin (2018) Scalability study for the group recommendation problem solved by integer linear programming. Master of Computer Science / M1 ORO (Operation Research and Optimization), University of Nantes, january-june.
   

• Hugo Boisaubert (2018) Feature subset selection in high-dimensional settings. A comprehensive comparison of five methods dedicated to the detection of epistasis patterns in large real genetic datasets. Master of Bioinformatics (M2), University of Nantes, march-september.
   

• Valentine Jourdan (2018) Design and development of a genetic algorithm dedicated to feature subset selection in a context of big data. Master of Computer Science / M1 ORO (Operation Research and Optimization), University of Nantes, january-june.
   

• Fatima Cheerak (2018) Enhancement of feature subset selection in high-dimensional settings, based on a GRASP metaheuristic. Master of Computer Science / M1 ORO (Operation Research and Optimization), University of Nantes, january-june.
   

• Fabien Rousseau (2015) Multilocus strategies to uncover factors potentially responsible for genetic pathologies. Master of Bioinformatics (M2), University of nantes, march-september.
   

• Eugénie Bire (2015) Coupling a predictive computational proteomic approach and a genetical analysis, for the purpose of improving the quality of association studies. Master of Bioinformatics (M2), University of Nantes, march-august.
   

• Charleen Kemps (2015) Identification of genotype-phenotype associations at the genome scale, for plants genomics. Master of Bioinformatics (M2), University of Nantes, march-august.
   

• Aurélien Dugourd (2014) Cooperation of a model representing genetical data with a variant of random forests, for the purpose of genome wide association studies. Master of Bioinformatics (M1), University of Nantes, march-june.
   

• Thomas Morriseau (2010) Development of the GWAS-AS application. Master of Bioinformatics (M2), University of Nantes. Collaboration with the Institut du Thorax (C. Dina), Nantes, march-august.
   

• Hervé Maniraguha (2010) Implementation of the  Restricted Partition Method (RPM) dedicated to the identification of epistasy, Master of Bioinformatics (M1), University of Nantes, march-august.
   

• Eric Gaertner (2010) Automated innovation in drug discovery using multi-attribute inverse design exploration, Master of Computer Science (Optimization and Operations Research mention) (M2), University of Nantes. Co-supervision with the main supervisor (University of Leiden, The Netherlands) , march-june.
   

• Quentin Thominet (2006) Improving the complexity of haplotype inference, Master of Computer Science (M2), University of Nantes. Initiator of the project. Co-supervision with J. Bourdon (LINA/Combi), february-august.
   

• Pierre Logodin, Christophe Delima (2005) Characterization and visualization of genomic signatures in prokaryotic genomes. Master of Computer Science (M1), University of Nantes, january-may.

 

• José Vaz E Silva, Jocelyn Pointeau (2004) Contextual alignment of nucleotide sequences. Master of Computer Science (M1), University of Nantes, january-may.
   

• Gaël Herry, Arnaud Drazek (2004) Graphical interface for the prediction and the visualization of spacial conformation of RNA molecules, Master of Computer Science (M1), University of Nantes, january-may.
   

• Yann Bihan, Jérôme Guillet (2004) Classification of RNA secondary structures. Master of Computer Science (M1), University of Nantes, january-may.
   

• Jeanne Cambefort (2004)  Identification of putative strong promoters in Thermotoga maritima bacterial genome, Master of Computer Science and Genomics (M2), University of Rennes 1. Collaboration with the U3B (now renamed UFIP (UMR CNRS 6286) ) (Frédérique Braun), january-june.
  
   

Engineers
 

• service provider (nov 2016 – july 2017). Scientific computing and developements for the ANR SAMOGWAS project. Reworking of code and further developments,  deployment of the software packages under various Linux platforms.
   

• J. Teulade (march 2015 – april 2016) Computing and developements for the ANR SAMOGWAS project.
   

• S. Demey (2005-2006)  Development of the software suite BACTRANS2. Identification and characterization of strong promoters in procaryote genomes. April-december 2005 : funding by the CPER  (State-Region plan contract) program Post-Genomics and Technological Innovations. January-september 2006 : funding by Ouest-Genopole (now renamed Biogenouest)
   

Students in Engineering Schools
 

• Adèle Capitaine, Maha Séhouate (2009 / 2010)  Modeling of the dependences between genetic markers with a variable length Markov chain; implementation and evaluation of two variants of the algorithm. Polytech Nantes, 4th year project, december-april.

CNAM
 

• François Fani (2008) Improvement of a method dedicated to the inference of missing data in large arrays of genetical data, through iterative bi-directional array scans; implementation and evaluation of two variants of the algorithm. CNAM nantes, IT project manager internship, 4th year, february-july.