top of page


 

 

 

Supervision of Master Students and Others

 

Master Students
​

 

  • Oscar Roussel (2025) Usage and performance of Graph Neural Networks for mapping applications to an
    electronic platform. Master of Computer Science /     M2 ORO (Operation Research and Optimization), Nantes University, february-july.
     

  • Titouan Ravard (2025) Exploration of a process mining approach contextualized with multivariate time series. M1 Smart Computing (Graduate Program), Nantes University (TER : november - april  - internship : may - july), co-supervision with H. Boisaubert (LS2N). 
     

  • Justin Payeur (2025) Construction of surgical process models. Master of Bioinformatics (M1), University of Nantes, march-july, co-supervision with H. Boisaubert (LS2N). 
    ​

  • Quentin Victor (2024) Digital twin of a patient under anesthesia: exploration and evaluation of Deep Learning approaches. Master of Bioinformatics (M2), Nantes University, march-september.
     

  • Ianis Clavier (2024) Simulation of the evolution of a digital patient's physiological parameters in the operating room. Exploration and evaluation of deep neural network-based approaches. Master of Bioinformatics (M2), Nantes University, march-september.
     

  • Chloé Grivaud (2024) Construction and statistical validation of models dedicated to generating event traces associated with multivariate time series. Application to drug interactions during thyroidectomy and appendectomy procedures. Master of Bioinformatics (M1), University of Nantes, march-september, co-supervision with H. Boisaubert (LS2N). 
     

  • Antoine Bouchet (2024) Design and statistical validation of models for generating event traces associated with multivariate time series. Application to surgeries in the context of anaphylactic shock events. Master of Bioinformatics (M1), University of Nantes, march-september, co-supervision with H. Boisaubert (LS2N). 
     

  • Julien Paris (2022) Development of a deep learning-based model for generating realistic anesthetic profiles. Master of Bioinformatics (M2), Nantes University, march-september.
                     

  • Lucas Vincent (2021) Interactive simulation of a digital patient in the operating room. Exploitation of past observed surgeries to guide the scenario run by a learner. Master of Bioinformatics (M2), University of Rennes 1, march-september.
                     

  • Julien Paris (2021) Contribution to the development of tools dedicated to pattern discovery and pattern recognition in anaesthetic profiles. Master of Bioinformatics (M1), University of Nantes, march-july.
     

  • Fatima Cheerak (2019) Metaheuristics for the synthetic representation of event traces. Master of Computer Science / M2 ORO (Operation Research and Optimization), University of Nantes, february-july.
     

  • Emile Benoit (2018) Representative decision for the preferences of a group. Experimental analysis of the limitations of a resolution method based on integer linear programming. Master of Computer Science / M1 ORO (Operation Research and Optimization), University of Nantes, january-june.
     

  • Rémi Pelloquin (2018) Scalability study for the group recommendation problem solved by integer linear programming. Master of Computer Science / M1 ORO (Operation Research and Optimization), University of Nantes, january-june.
     

  • Hugo Boisaubert (2018) Feature subset selection in high-dimensional settings. A comprehensive comparison of five methods dedicated to the detection of epistasis patterns in large real genetic datasets. Master of Bioinformatics (M2), University of Nantes, march-september.
     

  • Valentine Jourdan (2018) Design and development of a genetic algorithm dedicated to feature subset selection in a context of big data. Master of Computer Science / M1 ORO (Operation Research and Optimization), University of Nantes, january-june.
     

  • Fatima Cheerak (2018) Enhancement of feature subset selection in high-dimensional settings, based on a GRASP metaheuristic. Master of Computer Science / M1 ORO (Operation Research and Optimization), University of Nantes, january-june.
     

  • Fabien Rousseau (2015) Multilocus strategies to uncover factors potentially responsible for genetic pathologies. Master of Bioinformatics (M2), University of nantes, march-september.
     

  • Eugénie Bire (2015) Coupling a predictive computational proteomic approach and a genetical analysis, for the purpose of improving the quality of association studies. Master of Bioinformatics (M2), University of Nantes, march-august.
     

  • Charleen Kemps (2015) Identification of genotype-phenotype associations at the genome scale, for plants genomics. Master of Bioinformatics (M2), University of Nantes, march-august.
     

  • Aurélien Dugourd (2014) Cooperation of a model representing genetical data with a variant of random forests, for the purpose of genome wide association studies. Master of Bioinformatics (M1), University of Nantes, march-june.
     

  • Thomas Morriseau (2010) Development of the GWAS-AS application. Master of Bioinformatics (M2), University of Nantes. Collaboration with the Institut du Thorax (C. Dina), Nantes, march-august.
     

  • Hervé Maniraguha (2010) Implementation of the  Restricted Partition Method (RPM) dedicated to the identification of epistasy, Master of Bioinformatics (M1), University of Nantes, march-august.
     

  • Eric Gaertner (2010) Automated innovation in drug discovery using multi-attribute inverse design exploration, Master of Computer Science (Optimization and Operations Research mention) (M2), University of Nantes. Co-supervision with the main supervisor (University of Leiden, The Netherlands) , march-june.
     

  • Quentin Thominet (2006) Improving the complexity of haplotype inference, Master of Computer Science (M2), University of Nantes. Initiator of the project. Co-supervision with J. Bourdon (LINA/Combi), february-august.
     

  • Pierre Logodin, Christophe Delima (2005) Characterization and visualization of genomic signatures in prokaryotic genomes. Master of Computer Science (M1), University of Nantes, january-may.

 

  • José Vaz E Silva, Jocelyn Pointeau (2004) Contextual alignment of nucleotide sequences. Master of Computer Science (M1), University of Nantes, january-may.
     

  • Gaël Herry, Arnaud Drazek (2004) Graphical interface for the prediction and the visualization of spacial conformation of RNA molecules, Master of Computer Science (M1), University of Nantes, january-may.
     

  • Yann Bihan, Jérôme Guillet (2004) Classification of RNA secondary structures. Master of Computer Science (M1), University of Nantes, january-may.
     

  • Jeanne Cambefort (2004)  Identification of putative strong promoters in Thermotoga maritima bacterial genome, Master of Computer Science and Genomics (M2), University of Rennes 1. Collaboration with the U3B (now renamed UFIP (UMR CNRS 6286) ) (Frédérique Braun), january-june.

     

Engineers
 

  • H. Boujida (january 2024 -december 2025). Sofware development and scientific computing for the SPARS project's WP2 workpackage, CominLabs Labex (Rennes)
     

  • service provider (nov 2016 – july 2017). Scientific computing and developements for the ANR SAMOGWAS project. Reworking of code and further developments,  deployment of the software packages under various Linux platforms.
     

  • J. Teulade (march 2015 – april 2016) Computing and developments for the ANR SAMOGWAS project.
     

  • S. Demey (2005-2006)  Development of the software suite BACTRANS2. Identification and characterization of strong promoters in procaryote genomes. April-december 2005 : funding by the CPER  (State-Region plan contract) program Post-Genomics and Technological Innovations. January-september 2006 : funding by Ouest-Genopole (now renamed Biogenouest)
     



Students in Engineering Schools
 

  • Zainab Ghrayeb (2024)  Energy efficiency optimization of multiprocessor systems with graph-based machine learning methods. Master 2 Automatique et Robotique, Ecole Centrale Nantes, spécialité Traitement du signal et de l'Image, 5th year internship,  february-august, joint supervision with S. Le Nours (IETR, Nantes),  funding by  NExt research cluster FAISTOS
     

  • ​Cécilia Satrin (2024) Generation of mixed temporal series and discrete events using generative neural networks. Bordeaux - INP spécialité Mathématiques, Mécanique et Simulation numérique, 5th year internship, march-september, joint supervision with F. Taïa-Alaoui (GRICAD, Grenoble), funding by GRICAD.
     

  • Ibrahim El Umari (2023) Annotation of time series using contextual variables calculated from an event history. Polytech Nantes, 4th year project, may-august.
     

  • Adèle Capitaine, Maha Séhouate (2009 / 2010)  Modeling of the dependences between genetic markers with a variable length Markov chain; implementation and evaluation of two variants of the algorithm. Polytech Nantes, 4th year project, december-april.



CNAM
 

  • François Fani (2008) Improvement of a method dedicated to the inference of missing data in large arrays of genetical data, through iterative bi-directional array scans; implementation and evaluation of two variants of the algorithm. CNAM nantes, IT project manager internship, 4th year, february-july.

 

 

bottom of page